J3_7ZHG_015

3D structure

PDB id

7ZHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CAAG*CUAGUACC*GCGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZHG|1|2|C|908
7ZHG|1|2|A|909
7ZHG|1|2|A|910
7ZHG|1|2|G|911
*
7ZHG|1|2|C|1318
7ZHG|1|2|U|1319
7ZHG|1|2|A|1320
7ZHG|1|2|G|1321
7ZHG|1|2|U|1322
7ZHG|1|2|A|1323
7ZHG|1|2|C|1324
7ZHG|1|2|C|1325
*
7ZHG|1|2|G|1345
7ZHG|1|2|C|1346
7ZHG|1|2|G|1347
7ZHG|1|2|A|1348
7ZHG|1|2|A|1349
7ZHG|1|2|U|1350
7ZHG|1|2|A|1351
7ZHG|1|2|C|1352
7ZHG|1|2|G|1353

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain X

30S ribosomal protein S28e