J3_7ZHG_020

3D structure

PDB id

7ZHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGGG

Length

20 nucleotides

Bulged bases

7ZHG|1|2|G|1157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZHG|1|2|C|1081
7ZHG|1|2|G|1082
7ZHG|1|2|C|1083
*
7ZHG|1|2|G|1129
7ZHG|1|2|G|1130
7ZHG|1|2|A|1131
7ZHG|1|2|C|1132
7ZHG|1|2|U|1133
7ZHG|1|2|G|1134
7ZHG|1|2|C|1135
*
7ZHG|1|2|G|1149
7ZHG|1|2|A|1150
7ZHG|1|2|G|1151
7ZHG|1|2|G|1152
7ZHG|1|2|A|1153
7ZHG|1|2|A|1154
7ZHG|1|2|G|1155
7ZHG|1|2|G|1156
7ZHG|1|2|G|1157
7ZHG|1|2|G|1158

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain L

30S ribosomal protein S10

Chain P

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S17e