J3_7ZJX_027
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJX_027 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.371
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7ZJX|1|S2|U|1341
7ZJX|1|S2|C|1342
7ZJX|1|S2|U|1343
7ZJX|1|S2|U|1344
7ZJX|1|S2|A|1345
7ZJX|1|S2|G|1346
*
7ZJX|1|S2|C|1385
7ZJX|1|S2|G|1386
7ZJX|1|S2|A|1387
7ZJX|1|S2|G|1388
7ZJX|1|S2|A|1389
7ZJX|1|S2|C|1390
*
7ZJX|1|S2|G|1482
7ZJX|1|S2|C|1483
7ZJX|1|S2|A|1484
7ZJX|1|S2|A|1485
7ZJX|1|S2|U|1486
7ZJX|1|S2|A|1487
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S29
- Chain SN
- 40S ribosomal protein uS5
- Chain SO
- 40S ribosomal protein S3
- Chain Sb
- 40S ribosomal protein uS9
- Chain Sc
- 40S ribosomal protein S17
- Chain Sf
- 40S ribosomal protein S20
Coloring options: