J3_7ZOD_015

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CCAGGAUG*CAUUUAAAGAAA*UCACUGG

Length

27 nucleotides

Bulged bases

7ZOD|1|b|C|1053, 7ZOD|1|b|A|1057, 7ZOD|1|b|U|1083, 7ZOD|1|b|A|1103, 7ZOD|1|b|U|1105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZOD|1|b|C|1052
7ZOD|1|b|C|1053
7ZOD|1|b|A|1054
7ZOD|1|b|G|1055
7ZOD|1|b|G|1056
7ZOD|1|b|A|1057
7ZOD|1|b|U|1058
7ZOD|1|b|G|1059
*
7ZOD|1|b|C|1079
7ZOD|1|b|A|1080
7ZOD|1|b|U|1081
7ZOD|1|b|U|1082
7ZOD|1|b|U|1083
7ZOD|1|b|A|1084
7ZOD|1|b|A|1085
7ZOD|1|b|A|1086
7ZOD|1|b|G|1087
7ZOD|1|b|A|1088
7ZOD|1|b|A|1089
7ZOD|1|b|A|1090
*
7ZOD|1|b|U|1101
7ZOD|1|b|C|1102
7ZOD|1|b|A|1103
7ZOD|1|b|C|1104
7ZOD|1|b|U|1105
7ZOD|1|b|G|1106
7ZOD|1|b|G|1107

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36