J3_7ZRS_027
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 7ZRS|1|5|G|2550, 7ZRS|1|5|U|2551, 7ZRS|1|5|U|2552, 7ZRS|1|5|A|2555, 7ZRS|1|5|U|2559, 7ZRS|1|5|U|2560, 7ZRS|1|5|C|2561
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZRS_027 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1461
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7ZRS|1|5|A|2530
7ZRS|1|5|G|2531
7ZRS|1|5|C|2532
7ZRS|1|5|U|2533
*
7ZRS|1|5|A|2548
7ZRS|1|5|C|2549
7ZRS|1|5|G|2550
7ZRS|1|5|U|2551
7ZRS|1|5|U|2552
7ZRS|1|5|C|2553
7ZRS|1|5|U|2554
7ZRS|1|5|A|2555
7ZRS|1|5|G|2556
7ZRS|1|5|C|2557
7ZRS|1|5|A|2558
7ZRS|1|5|U|2559
7ZRS|1|5|U|2560
7ZRS|1|5|C|2561
7ZRS|1|5|A|2562
7ZRS|1|5|A|2563
7ZRS|1|5|G|2564
*
7ZRS|1|5|U|2579
7ZRS|1|5|G|2580
7ZRS|1|5|A|2581
7ZRS|1|5|U|2582
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein L2-A
- Chain BG
- 60S ribosomal protein L8-A
- Chain BW
- 60S ribosomal protein L25
- Chain BY
- 60S ribosomal protein L27-A
- Chain Bb
- 60S ribosomal protein L30
- Chain Bf
- 60S ribosomal protein L34-A
- Chain Bo
- 60S ribosomal protein L43-A
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