J3_7ZRS_036
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CUUG*CGAUAGCGAACAAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7ZRS|1|3|U|23, 7ZRS|1|5|U|343, 7ZRS|1|5|A|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZRS_036 not in the Motif Atlas
- Geometric match to J3_5TBW_061
- Geometric discrepancy: 0.0507
- The information below is about J3_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
7ZRS|1|3|C|21
7ZRS|1|3|U|22
7ZRS|1|3|U|23
7ZRS|1|3|G|24
*
7ZRS|1|5|C|340
7ZRS|1|5|G|341
7ZRS|1|5|A|342
7ZRS|1|5|U|343
7ZRS|1|5|A|344
7ZRS|1|5|G|345
7ZRS|1|5|C|346
7ZRS|1|5|G|347
7ZRS|1|5|A|348
7ZRS|1|5|A|349
7ZRS|1|5|C|350
7ZRS|1|5|A|351
7ZRS|1|5|A|352
7ZRS|1|5|G|353
7ZRS|1|5|U|354
7ZRS|1|5|A|355
7ZRS|1|5|C|356
*
7ZRS|1|5|G|363
7ZRS|1|5|G|364
7ZRS|1|5|A|365
7ZRS|1|5|A|366
7ZRS|1|5|A|367
7ZRS|1|5|G|368
Current chains
- Chain 3
- 5.8S ribosomal RNA
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BC
- RPL4A isoform 1
- Chain BX
- 60S ribosomal protein L26-A
- Chain Bi
- 60S ribosomal protein L37-A
- Chain Bk
- 60S ribosomal protein L39
Coloring options: