J3_7ZRS_044
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 7ZRS|1|5|A|3173, 7ZRS|1|5|G|3174, 7ZRS|1|5|A|3216, 7ZRS|1|5|G|3217, 7ZRS|1|5|G|3220, 7ZRS|1|5|A|3269, 7ZRS|1|5|U|3271, 7ZRS|1|5|C|3273, 7ZRS|1|5|U|3276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZRS_044 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1804
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7ZRS|1|5|U|3172
7ZRS|1|5|A|3173
7ZRS|1|5|G|3174
7ZRS|1|5|A|3175
7ZRS|1|5|U|3176
7ZRS|1|5|G|3177
*
7ZRS|1|5|C|3213
7ZRS|1|5|A|3214
7ZRS|1|5|U|3215
7ZRS|1|5|A|3216
7ZRS|1|5|G|3217
7ZRS|1|5|C|3218
7ZRS|1|5|A|3219
7ZRS|1|5|G|3220
7ZRS|1|5|G|3221
*
7ZRS|1|5|C|3266
7ZRS|1|5|G|3267
7ZRS|1|5|A|3268
7ZRS|1|5|A|3269
7ZRS|1|5|U|3270
7ZRS|1|5|U|3271
7ZRS|1|5|G|3272
7ZRS|1|5|C|3273
7ZRS|1|5|A|3274
7ZRS|1|5|A|3275
7ZRS|1|5|U|3276
7ZRS|1|5|G|3277
7ZRS|1|5|U|3278
7ZRS|1|5|C|3279
7ZRS|1|5|A|3280
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BE
- 60S ribosomal protein L6-B
- Chain BL
- 60S ribosomal protein L14-A
- Chain BN
- 60S ribosomal protein L16-A
- Chain BO
- 60S ribosomal protein L17-A
- Chain Be
- 60S ribosomal protein L33-A
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