J3_7ZUX_008

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

7ZUX|1|2|G|1199, 7ZUX|1|2|G|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZUX_008 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.0954

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7ZUX|1|2|C|1180
7ZUX|1|2|U|1181
7ZUX|1|2|U|1182
7ZUX|1|2|A|1183
7ZUX|1|2|A|1184
7ZUX|1|2|U|1185
7ZUX|1|2|U|1186
7ZUX|1|2|U|1187
*
7ZUX|1|2|G|1198
7ZUX|1|2|G|1199
7ZUX|1|2|G|1200
7ZUX|1|2|G|1201
7ZUX|1|2|A|1202
7ZUX|1|2|A|1203
7ZUX|1|2|A|1204
7ZUX|1|2|C|1205
7ZUX|1|2|U|1206
7ZUX|1|2|C|1207
7ZUX|1|2|A|1208
7ZUX|1|2|C|1209
*
7ZUX|1|2|G|1454
7ZUX|1|2|G|1455
7ZUX|1|2|C|1456
7ZUX|1|2|C|1457
7ZUX|1|2|G|1458

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain DP

40S ribosomal protein S15

Chain DS

40S ribosomal protein S18-A

Chain DU

40S ribosomal protein S20

Chain Dd

40S ribosomal protein S29-A

Chain Df

Ubiquitin