J3_7ZW0_003

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZW0_003 not in the Motif Atlas

Homologous match to J3_8C3A_035

Geometric discrepancy: 0.1281

The information below is about J3_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_00811.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7ZW0|1|2|A|760
7ZW0|1|2|G|761
7ZW0|1|2|A|762
7ZW0|1|2|G|763
*
7ZW0|1|2|C|773
7ZW0|1|2|A|774
7ZW0|1|2|G|775
*
7ZW0|1|2|U|785
7ZW0|1|2|C|786
7ZW0|1|2|G|787
7ZW0|1|2|A|788
7ZW0|1|2|A|789
7ZW0|1|2|U|790

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sS

40S ribosomal protein S4-B

Chain sW

40S ribosomal protein S9-A

Chain sd

40S ribosomal protein S24-A