3D structure

PDB id
7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
FAP-80S Complex - Rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
7ZW0|1|2|U|864
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ZW0_033 not in the Motif Atlas
Homologous match to J3_8P9A_072
Geometric discrepancy: 0.0916
The information below is about J3_8P9A_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7ZW0|1|2|U|633
7ZW0|1|2|G|634
7ZW0|1|2|A|635
*
7ZW0|1|2|U|861
7ZW0|1|2|A|862
7ZW0|1|2|A|863
7ZW0|1|2|U|864
7ZW0|1|2|A|865
7ZW0|1|2|G|866
*
7ZW0|1|2|C|962
7ZW0|1|2|A|963
7ZW0|1|2|U|964
7ZW0|1|2|U|965
7ZW0|1|2|A|966

Current chains

Chain 2
18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sU
40S ribosomal protein S7-A
Chain sX
40S ribosomal protein S11-A
Chain sY
40S ribosomal protein S13
Chain sb
40S ribosomal protein S22-A
Chain sc
40S ribosomal protein S23-A
Chain sf
40S ribosomal protein S27-A

Coloring options:


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