J3_7ZW0_039

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAC*GCUAAGG*CACC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZW0_039 not in the Motif Atlas

Geometric match to J3_8VTW_042

Geometric discrepancy: 0.3679

The information below is about J3_8VTW_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46457.1

Basepair signature

cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7ZW0|1|LA|G|1229
7ZW0|1|LA|G|1230
7ZW0|1|LA|A|1231
7ZW0|1|LA|C|1232
*
7ZW0|1|LA|G|1256
7ZW0|1|LA|C|1257
7ZW0|1|LA|U|1258
7ZW0|1|LA|A|1259
7ZW0|1|LA|A|1260
7ZW0|1|LA|G|1261
7ZW0|1|LA|G|1262
*
7ZW0|1|LA|C|1277
7ZW0|1|LA|A|1278
7ZW0|1|LA|C|1279
7ZW0|1|LA|C|1280

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains