J3_8A3D_009
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- GAGAUGG*CGUUC*GAAGGGGGCCGA(PSU)C
- Length
- 26 nucleotides
- Bulged bases
- 8A3D|1|A|A|2472, 8A3D|1|A|G|2475, 8A3D|1|A|G|2503, 8A3D|1|A|C|2504
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8A3D|1|A|G|2450
8A3D|1|A|A|2451
8A3D|1|A|G|2452
8A3D|1|A|A|2453
8A3D|1|A|U|2454
8A3D|1|A|G|2455
8A3D|1|A|G|2456
*
8A3D|1|A|C|2465
8A3D|1|A|G|2466
8A3D|1|A|U|2467
8A3D|1|A|U|2468
8A3D|1|A|C|2469
*
8A3D|1|A|G|2471
8A3D|1|A|A|2472
8A3D|1|A|A|2473
8A3D|1|A|G|2474
8A3D|1|A|G|2475
8A3D|1|A|G|2476
8A3D|1|A|G|2502
8A3D|1|A|G|2503
8A3D|1|A|C|2504
8A3D|1|A|C|2505
8A3D|1|A|G|2506
8A3D|1|A|A|2507
8A3D|1|A|PSU|2508
8A3D|1|A|C|2509
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L8
- Chain R
- 60S ribosomal protein L23a
- Chain d
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L15
- Chain n
- 60S ribosomal protein L7a
Coloring options: