J3_8A3D_018
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CAAG*CCCAGCCCGUGGAC*GGUAG
- Length
- 23 nucleotides
- Bulged bases
- 8A3D|1|A|A|218, 8A3D|1|A|G|219, 8A3D|1|A|U|224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8A3D|1|A|C|196
8A3D|1|A|A|197
8A3D|1|A|A|198
8A3D|1|A|G|199
*
8A3D|1|A|C|215
8A3D|1|A|C|216
8A3D|1|A|C|217
8A3D|1|A|A|218
8A3D|1|A|G|219
8A3D|1|A|C|220
8A3D|1|A|C|221
8A3D|1|A|C|222
8A3D|1|A|G|223
8A3D|1|A|U|224
8A3D|1|A|G|225
8A3D|1|A|G|226
8A3D|1|A|A|227
8A3D|1|A|C|228
*
8A3D|1|A|G|240
8A3D|1|A|G|241
8A3D|1|A|U|242
8A3D|1|A|A|243
8A3D|1|A|G|244
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4
- Chain S
- 60S ribosomal protein L26
Coloring options: