J3_8A3D_019
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8A3D|1|A|U|354, 8A3D|1|A|A|362, 8A3D|1|C|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8A3D_019 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0459
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8A3D|1|A|C|351
8A3D|1|A|G|352
8A3D|1|A|A|353
8A3D|1|A|U|354
8A3D|1|A|A|355
8A3D|1|A|G|356
8A3D|1|A|U|357
8A3D|1|A|C|358
8A3D|1|A|A|359
8A3D|1|A|A|360
8A3D|1|A|C|361
8A3D|1|A|A|362
8A3D|1|A|A|363
8A3D|1|A|G|364
8A3D|1|A|U|365
8A3D|1|A|A|366
8A3D|1|A|C|367
*
8A3D|1|A|G|374
8A3D|1|A|G|375
8A3D|1|A|A|376
8A3D|1|A|A|377
8A3D|1|A|A|378
8A3D|1|A|G|379
*
8A3D|1|C|C|21
8A3D|1|C|U|22
8A3D|1|C|C|23
8A3D|1|C|G|24
Current chains
- Chain A
- 28S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4
- Chain S
- 60S ribosomal protein L26
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
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