J3_8A3L_010

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8A3L|1|a|U|686, 8A3L|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A3L_010 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0687

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8A3L|1|a|U|683
8A3L|1|a|G|684
8A3L|1|a|A|685
8A3L|1|a|U|686
8A3L|1|a|C|687
8A3L|1|a|U|688
8A3L|1|a|A|689
*
8A3L|1|a|U|773
8A3L|1|a|G|774
8A3L|1|a|G|775
*
8A3L|1|a|C|791
8A3L|1|a|A|792
8A3L|1|a|A|793
8A3L|1|a|A|794

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2