J3_8A3L_031

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8A3L|1|a|U|321, 8A3L|1|a|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A3L_031 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0669

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8A3L|1|a|G|297
8A3L|1|a|G|298
8A3L|1|a|A|299
8A3L|1|a|A|300
8A3L|1|a|G|301
*
8A3L|1|a|C|316
8A3L|1|a|G|317
8A3L|1|a|C|318
8A3L|1|a|G|319
8A3L|1|a|A|320
8A3L|1|a|U|321
8A3L|1|a|A|322
8A3L|1|a|C|323
8A3L|1|a|A|324
8A3L|1|a|G|325
*
8A3L|1|a|C|337
8A3L|1|a|G|338
8A3L|1|a|U|339
8A3L|1|a|A|340
8A3L|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24