J3_8A57_010

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGACA*UC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A57_010 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2292

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8A57|1|A|U|1475
8A57|1|A|G|1476
8A57|1|A|A|1477
8A57|1|A|C|1478
8A57|1|A|A|1479
*
8A57|1|A|U|1616
8A57|1|A|C|1617
*
8A57|1|A|G|1620
8A57|1|A|A|1621
8A57|1|A|A|1622
8A57|1|A|A|1623
8A57|1|A|A|1624
8A57|1|A|G|1625

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2