J3_8A57_024

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAUGG*CG*UCG

Length

11 nucleotides

Bulged bases

8A57|1|B|U|10, 8A57|1|B|U|12, 8A57|1|B|C|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A57|1|B|U|9
8A57|1|B|U|10
8A57|1|B|A|11
8A57|1|B|U|12
8A57|1|B|G|13
8A57|1|B|G|14
*
8A57|1|B|C|66
8A57|1|B|G|67
*
8A57|1|B|U|105
8A57|1|B|C|106
8A57|1|B|G|107

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L27