J3_8AGT_025

3D structure

PDB id

8AGT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

8AGT|1|f|A|3172, 8AGT|1|f|G|3173, 8AGT|1|f|A|3215, 8AGT|1|f|G|3216, 8AGT|1|f|G|3219, 8AGT|1|f|A|3268, 8AGT|1|f|U|3270, 8AGT|1|f|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AGT_025 not in the Motif Atlas

Homologous match to J3_8P9A_064

Geometric discrepancy: 0.1837

The information below is about J3_8P9A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03190.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8AGT|1|f|U|3171
8AGT|1|f|A|3172
8AGT|1|f|G|3173
8AGT|1|f|A|3174
8AGT|1|f|U|3175
8AGT|1|f|G|3176
*
8AGT|1|f|C|3212
8AGT|1|f|A|3213
8AGT|1|f|U|3214
8AGT|1|f|A|3215
8AGT|1|f|G|3216
8AGT|1|f|C|3217
8AGT|1|f|A|3218
8AGT|1|f|G|3219
8AGT|1|f|G|3220
*
8AGT|1|f|C|3265
8AGT|1|f|G|3266
8AGT|1|f|A|3267
8AGT|1|f|A|3268
8AGT|1|f|U|3269
8AGT|1|f|U|3270
8AGT|1|f|G|3271
8AGT|1|f|C|3272
8AGT|1|f|A|3273
8AGT|1|f|A|3274
8AGT|1|f|U|3275
8AGT|1|f|G|3276
8AGT|1|f|U|3277
8AGT|1|f|C|3278
8AGT|1|f|A|3279

Current chains

Chain f

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L16-A

Chain C

60S ribosomal protein L17-A

Chain S

60S ribosomal protein L33-A

Chain n

60S ribosomal protein L6-B

Chain u

60S ribosomal protein L14-A