J3_8AGV_006

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

8AGV|1|f|A|1065, 8AGV|1|f|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AGV_006 not in the Motif Atlas

Homologous match to J3_5TBW_006

Geometric discrepancy: 0.1771

The information below is about J3_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11066.3

Basepair signature

cWW-cSS-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8AGV|1|f|U|986
8AGV|1|f|U|987
*
8AGV|1|f|A|1062
8AGV|1|f|G|1063
8AGV|1|f|A|1064
8AGV|1|f|A|1065
8AGV|1|f|G|1066
*
8AGV|1|f|C|1092
8AGV|1|f|A|1093
8AGV|1|f|U|1094
8AGV|1|f|U|1095
8AGV|1|f|U|1096
8AGV|1|f|G|1097
8AGV|1|f|A|1098

Current chains

Chain f

25S rRNA

Nearby chains

Chain G

60S ribosomal protein L21-A

Chain O

60S ribosomal protein L29

Chain o

60S ribosomal protein L7-A