J3_8AGV_016
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGV_016 not in the Motif Atlas
- Homologous match to J3_5TBW_015
- Geometric discrepancy: 0.1232
- The information below is about J3_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_48314.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8AGV|1|f|C|3298
8AGV|1|f|A|3299
8AGV|1|f|U|3300
*
8AGV|1|f|A|3314
8AGV|1|f|G|3315
8AGV|1|f|A|3316
8AGV|1|f|U|3317
8AGV|1|f|G|3318
*
8AGV|1|f|C|3388
8AGV|1|f|U|3389
8AGV|1|f|G|3390
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L17-A
- Chain Q
- 60S ribosomal protein L31-A
- Chain k
- 60S ribosomal protein L3
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