J3_8AGW_025

3D structure

PDB id

8AGW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

8AGW|1|f|A|3172, 8AGW|1|f|G|3173, 8AGW|1|f|A|3215, 8AGW|1|f|G|3216, 8AGW|1|f|G|3219, 8AGW|1|f|A|3268, 8AGW|1|f|U|3270, 8AGW|1|f|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AGW_025 not in the Motif Atlas

Homologous match to J3_8P9A_064

Geometric discrepancy: 0.1837

The information below is about J3_8P9A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03190.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8AGW|1|f|U|3171
8AGW|1|f|A|3172
8AGW|1|f|G|3173
8AGW|1|f|A|3174
8AGW|1|f|U|3175
8AGW|1|f|G|3176
*
8AGW|1|f|C|3212
8AGW|1|f|A|3213
8AGW|1|f|U|3214
8AGW|1|f|A|3215
8AGW|1|f|G|3216
8AGW|1|f|C|3217
8AGW|1|f|A|3218
8AGW|1|f|G|3219
8AGW|1|f|G|3220
*
8AGW|1|f|C|3265
8AGW|1|f|G|3266
8AGW|1|f|A|3267
8AGW|1|f|A|3268
8AGW|1|f|U|3269
8AGW|1|f|U|3270
8AGW|1|f|G|3271
8AGW|1|f|C|3272
8AGW|1|f|A|3273
8AGW|1|f|A|3274
8AGW|1|f|U|3275
8AGW|1|f|G|3276
8AGW|1|f|U|3277
8AGW|1|f|C|3278
8AGW|1|f|A|3279

Current chains

Chain f

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L16-A

Chain C

60S ribosomal protein L17-A

Chain S

60S ribosomal protein L33-A

Chain n

60S ribosomal protein L6-B

Chain u

60S ribosomal protein L14-A