J3_8AGX_013
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 8AGX|1|f|G|2549, 8AGX|1|f|U|2550, 8AGX|1|f|U|2551, 8AGX|1|f|A|2554, 8AGX|1|f|U|2558, 8AGX|1|f|U|2559, 8AGX|1|f|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGX_013 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1477
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8AGX|1|f|A|2529
8AGX|1|f|G|2530
8AGX|1|f|C|2531
8AGX|1|f|U|2532
*
8AGX|1|f|A|2547
8AGX|1|f|C|2548
8AGX|1|f|G|2549
8AGX|1|f|U|2550
8AGX|1|f|U|2551
8AGX|1|f|C|2552
8AGX|1|f|U|2553
8AGX|1|f|A|2554
8AGX|1|f|G|2555
8AGX|1|f|C|2556
8AGX|1|f|A|2557
8AGX|1|f|U|2558
8AGX|1|f|U|2559
8AGX|1|f|C|2560
8AGX|1|f|A|2561
8AGX|1|f|A|2562
8AGX|1|f|G|2563
*
8AGX|1|f|U|2578
8AGX|1|f|G|2579
8AGX|1|f|A|2580
8AGX|1|f|U|2581
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L25
- Chain M
- 60S ribosomal protein L27-A
- Chain P
- 60S ribosomal protein L30
- Chain T
- 60S ribosomal protein L34-A
- Chain c
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L8-A
Coloring options: