J3_8AGX_025
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 8AGX|1|f|A|3172, 8AGX|1|f|G|3173, 8AGX|1|f|A|3215, 8AGX|1|f|G|3216, 8AGX|1|f|G|3219, 8AGX|1|f|A|3268, 8AGX|1|f|U|3270, 8AGX|1|f|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGX_025 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1837
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8AGX|1|f|U|3171
8AGX|1|f|A|3172
8AGX|1|f|G|3173
8AGX|1|f|A|3174
8AGX|1|f|U|3175
8AGX|1|f|G|3176
*
8AGX|1|f|C|3212
8AGX|1|f|A|3213
8AGX|1|f|U|3214
8AGX|1|f|A|3215
8AGX|1|f|G|3216
8AGX|1|f|C|3217
8AGX|1|f|A|3218
8AGX|1|f|G|3219
8AGX|1|f|G|3220
*
8AGX|1|f|C|3265
8AGX|1|f|G|3266
8AGX|1|f|A|3267
8AGX|1|f|A|3268
8AGX|1|f|U|3269
8AGX|1|f|U|3270
8AGX|1|f|G|3271
8AGX|1|f|C|3272
8AGX|1|f|A|3273
8AGX|1|f|A|3274
8AGX|1|f|U|3275
8AGX|1|f|G|3276
8AGX|1|f|U|3277
8AGX|1|f|C|3278
8AGX|1|f|A|3279
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L16-A
- Chain C
- 60S ribosomal protein L17-A
- Chain S
- 60S ribosomal protein L33-A
- Chain n
- 60S ribosomal protein L6-B
- Chain u
- 60S ribosomal protein L14-A
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