J3_8AGZ_018
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 8AGZ|1|f|U|117, 8AGZ|1|f|G|120, 8AGZ|1|f|A|121, 8AGZ|1|f|U|147, 8AGZ|1|f|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AGZ|1|f|C|113
8AGZ|1|f|A|114
8AGZ|1|f|A|115
8AGZ|1|f|A|116
8AGZ|1|f|U|117
8AGZ|1|f|U|118
8AGZ|1|f|U|119
8AGZ|1|f|G|120
8AGZ|1|f|A|121
8AGZ|1|f|A|122
8AGZ|1|f|A|123
8AGZ|1|f|U|124
*
8AGZ|1|f|A|144
8AGZ|1|f|G|145
8AGZ|1|f|U|146
8AGZ|1|f|U|147
8AGZ|1|f|G|148
8AGZ|1|f|U|149
8AGZ|1|f|A|150
8AGZ|1|f|A|151
8AGZ|1|f|U|152
8AGZ|1|f|U|153
8AGZ|1|f|U|154
8AGZ|1|f|G|155
8AGZ|1|f|G|156
8AGZ|1|f|A|157
8AGZ|1|f|G|158
*
8AGZ|1|f|C|263
8AGZ|1|f|G|264
8AGZ|1|f|A|265
8AGZ|1|f|A|266
8AGZ|1|f|G|267
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain U
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L36-A
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain p
- 60S ribosomal protein L8-A
- Chain t
- 60S ribosomal protein L13-A
Coloring options: