J3_8AGZ_020
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8AGZ|1|f|U|343, 8AGZ|1|f|A|351, 8AGZ|1|i|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGZ_020 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0483
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8AGZ|1|f|C|340
8AGZ|1|f|G|341
8AGZ|1|f|A|342
8AGZ|1|f|U|343
8AGZ|1|f|A|344
8AGZ|1|f|G|345
8AGZ|1|f|C|346
8AGZ|1|f|G|347
8AGZ|1|f|A|348
8AGZ|1|f|A|349
8AGZ|1|f|C|350
8AGZ|1|f|A|351
8AGZ|1|f|A|352
8AGZ|1|f|G|353
8AGZ|1|f|U|354
8AGZ|1|f|A|355
8AGZ|1|f|C|356
*
8AGZ|1|f|G|363
8AGZ|1|f|G|364
8AGZ|1|f|A|365
8AGZ|1|f|A|366
8AGZ|1|f|A|367
8AGZ|1|f|G|368
*
8AGZ|1|i|C|21
8AGZ|1|i|U|22
8AGZ|1|i|U|23
8AGZ|1|i|G|24
Current chains
- Chain f
- 25S rRNA
- Chain i
- 5.8S rRNA
Nearby chains
- Chain 1
- CAT-tailed nascent chain
- Chain L
- 60S ribosomal protein L26-A
- Chain W
- 60S ribosomal protein L37-A
- Chain Y
- 60S ribosomal protein L39
- Chain l
- 60S ribosomal protein L4-A
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