J3_8AGZ_022
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 8AGZ|1|f|C|1556, 8AGZ|1|f|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AGZ|1|f|A|1537
8AGZ|1|f|G|1538
8AGZ|1|f|A|1539
8AGZ|1|f|U|1540
8AGZ|1|f|G|1541
8AGZ|1|f|G|1542
*
8AGZ|1|f|C|1551
8AGZ|1|f|G|1552
8AGZ|1|f|U|1553
8AGZ|1|f|U|1554
8AGZ|1|f|U|1555
8AGZ|1|f|C|1556
8AGZ|1|f|A|1557
8AGZ|1|f|A|1558
8AGZ|1|f|A|1559
8AGZ|1|f|G|1560
*
8AGZ|1|f|C|1579
8AGZ|1|f|A|1580
8AGZ|1|f|C|1581
8AGZ|1|f|C|1582
8AGZ|1|f|A|1583
8AGZ|1|f|U|1584
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain K
- 60S ribosomal protein L25
- Chain W
- 60S ribosomal protein L37-A
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain j
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L8-A
Coloring options: