J3_8AKN_029
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 8AKN|1|B|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AKN_029 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.1244
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8AKN|1|B|C|990
8AKN|1|B|U|991
8AKN|1|B|U|992
8AKN|1|B|G|993
8AKN|1|B|A|994
8AKN|1|B|C|995
8AKN|1|B|A|996
8AKN|1|B|U|997
*
8AKN|1|B|A|1044
8AKN|1|B|C|1045
8AKN|1|B|A|1046
8AKN|1|B|G|1047
*
8AKN|1|B|C|1210
8AKN|1|B|U|1211
8AKN|1|B|U|1212
8AKN|1|B|A|1213
8AKN|1|B|C|1214
8AKN|1|B|G|1215
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain O
- 30S ribosomal protein S14
- Chain W
- Peptide chain release factor RF1
Coloring options: