J3_8AKN_032

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCUUAGCUCAGUGGUUAGAGCAG*UUGGUCG*CAGG

Length

34 nucleotides

Bulged bases

8AKN|1|Z|G|18, 8AKN|1|Z|U|19, 8AKN|1|Z|U|20, 8AKN|1|Z|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AKN|1|Z|C|5
8AKN|1|Z|C|6
8AKN|1|Z|U|7
8AKN|1|Z|U|8
8AKN|1|Z|A|9
8AKN|1|Z|G|10
8AKN|1|Z|C|11
8AKN|1|Z|U|12
8AKN|1|Z|C|13
8AKN|1|Z|A|14
8AKN|1|Z|G|15
8AKN|1|Z|U|16
8AKN|1|Z|G|17
8AKN|1|Z|G|18
8AKN|1|Z|U|19
8AKN|1|Z|U|20
8AKN|1|Z|A|21
8AKN|1|Z|G|22
8AKN|1|Z|A|23
8AKN|1|Z|G|24
8AKN|1|Z|C|25
8AKN|1|Z|A|26
8AKN|1|Z|G|27
*
8AKN|1|Z|U|43
8AKN|1|Z|U|44
8AKN|1|Z|G|45
8AKN|1|Z|G|46
8AKN|1|Z|U|47
8AKN|1|Z|C|48
8AKN|1|Z|G|49
*
8AKN|1|Z|C|65
8AKN|1|Z|A|66
8AKN|1|Z|G|67
8AKN|1|Z|G|68

Current chains

Chain Z

Isoleucine-tRNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain H

30S ribosomal protein S7

Chain a

Large subunit ribosomal RNA; LSU rRNA