J3_8AKN_032
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CCUUAGCUCAGUGGUUAGAGCAG*UUGGUCG*CAGG
- Length
- 34 nucleotides
- Bulged bases
- 8AKN|1|Z|G|18, 8AKN|1|Z|U|19, 8AKN|1|Z|U|20, 8AKN|1|Z|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AKN|1|Z|C|5
8AKN|1|Z|C|6
8AKN|1|Z|U|7
8AKN|1|Z|U|8
8AKN|1|Z|A|9
8AKN|1|Z|G|10
8AKN|1|Z|C|11
8AKN|1|Z|U|12
8AKN|1|Z|C|13
8AKN|1|Z|A|14
8AKN|1|Z|G|15
8AKN|1|Z|U|16
8AKN|1|Z|G|17
8AKN|1|Z|G|18
8AKN|1|Z|U|19
8AKN|1|Z|U|20
8AKN|1|Z|A|21
8AKN|1|Z|G|22
8AKN|1|Z|A|23
8AKN|1|Z|G|24
8AKN|1|Z|C|25
8AKN|1|Z|A|26
8AKN|1|Z|G|27
*
8AKN|1|Z|U|43
8AKN|1|Z|U|44
8AKN|1|Z|G|45
8AKN|1|Z|G|46
8AKN|1|Z|U|47
8AKN|1|Z|C|48
8AKN|1|Z|G|49
*
8AKN|1|Z|C|65
8AKN|1|Z|A|66
8AKN|1|Z|G|67
8AKN|1|Z|G|68
Current chains
- Chain Z
- Isoleucine-tRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain H
- 30S ribosomal protein S7
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: