J3_8AKN_035

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8AKN|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AKN_035 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0423

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8AKN|1|a|G|297
8AKN|1|a|G|298
8AKN|1|a|A|299
8AKN|1|a|A|300
8AKN|1|a|G|301
*
8AKN|1|a|C|316
8AKN|1|a|G|317
8AKN|1|a|C|318
8AKN|1|a|G|319
8AKN|1|a|A|320
8AKN|1|a|U|321
8AKN|1|a|A|322
8AKN|1|a|C|323
8AKN|1|a|A|324
8AKN|1|a|G|325
*
8AKN|1|a|C|337
8AKN|1|a|G|338
8AKN|1|a|U|339
8AKN|1|a|A|340
8AKN|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24