J3_8AM9_005

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AM9_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0817

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8AM9|1|B|C|936
8AM9|1|B|A|937
8AM9|1|B|A|938
8AM9|1|B|G|939
*
8AM9|1|B|C|1344
8AM9|1|B|U|1345
8AM9|1|B|A|1346
8AM9|1|B|G|1347
8AM9|1|B|U|1348
8AM9|1|B|A|1349
8AM9|1|B|A|1350
*
8AM9|1|B|U|1372
8AM9|1|B|G|1373
8AM9|1|B|A|1374
8AM9|1|B|A|1375
8AM9|1|B|U|1376
8AM9|1|B|A|1377
8AM9|1|B|C|1378
8AM9|1|B|G|1379

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain J

30S ribosomal protein S9