J3_8AM9_009

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGU*AUGUGC*GAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AM9|1|B|G|1003
8AM9|1|B|A|1004
8AM9|1|B|A|1005
8AM9|1|B|G|1006
8AM9|1|B|U|1007
*
8AM9|1|B|A|1022
8AM9|1|B|U|1023
8AM9|1|B|G|1024
8AM9|1|B|U|1025
8AM9|1|B|G|1026
8AM9|1|B|C|1027
*
8AM9|1|B|G|1034
8AM9|1|B|A|1035
8AM9|1|B|A|1036
8AM9|1|B|C|1037

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S3

Chain O

30S ribosomal protein S14