J3_8AM9_012
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 8AM9|1|B|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AM9_012 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.1186
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8AM9|1|B|U|1116
8AM9|1|B|A|1117
8AM9|1|B|U|1118
*
8AM9|1|B|A|1155
8AM9|1|B|G|1156
8AM9|1|B|A|1157
8AM9|1|B|C|1158
*
8AM9|1|B|G|1181
8AM9|1|B|G|1182
8AM9|1|B|U|1183
8AM9|1|B|G|1184
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S7
- Chain J
- 30S ribosomal protein S9
- Chain K
- 30S ribosomal protein S10
- Chain O
- 30S ribosomal protein S14
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