J3_8AM9_017

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AM9_017 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0641

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8AM9|1|a|C|698
8AM9|1|a|A|699
8AM9|1|a|G|700
*
8AM9|1|a|C|732
8AM9|1|a|G|733
8AM9|1|a|A|734
8AM9|1|a|A|735
8AM9|1|a|C|736
*
8AM9|1|a|G|760
8AM9|1|a|A|761
8AM9|1|a|U|762
8AM9|1|a|G|763

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2