J3_8AM9_029
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 8AM9|1|B|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AM9_029 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.123
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8AM9|1|B|C|990
8AM9|1|B|U|991
8AM9|1|B|U|992
8AM9|1|B|G|993
8AM9|1|B|A|994
8AM9|1|B|C|995
8AM9|1|B|A|996
8AM9|1|B|U|997
*
8AM9|1|B|A|1044
8AM9|1|B|C|1045
8AM9|1|B|A|1046
8AM9|1|B|G|1047
*
8AM9|1|B|C|1210
8AM9|1|B|U|1211
8AM9|1|B|U|1212
8AM9|1|B|A|1213
8AM9|1|B|C|1214
8AM9|1|B|G|1215
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain O
- 30S ribosomal protein S14
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