J3_8ANA_008

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CU(2MG)C*GCUAAGGUAG*CGAAUG

Length

20 nucleotides

Bulged bases

8ANA|1|a|U|1971

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ANA|1|a|C|1833
8ANA|1|a|U|1834
8ANA|1|a|2MG|1835
8ANA|1|a|C|1836
*
8ANA|1|a|G|1904
8ANA|1|a|C|1905
8ANA|1|a|U|1926
8ANA|1|a|A|1927
8ANA|1|a|A|1928
8ANA|1|a|G|1929
8ANA|1|a|G|1930
8ANA|1|a|U|1931
8ANA|1|a|A|1932
8ANA|1|a|G|1933
*
8ANA|1|a|C|1967
8ANA|1|a|G|1968
8ANA|1|a|A|1969
8ANA|1|a|A|1970
8ANA|1|a|U|1971
8ANA|1|a|G|1972

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2