J3_8ANA_017

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8ANA|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ANA_017 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0388

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8ANA|1|a|G|297
8ANA|1|a|G|298
8ANA|1|a|A|299
8ANA|1|a|A|300
8ANA|1|a|G|301
*
8ANA|1|a|C|316
8ANA|1|a|G|317
8ANA|1|a|C|318
8ANA|1|a|G|319
8ANA|1|a|A|320
8ANA|1|a|U|321
8ANA|1|a|A|322
8ANA|1|a|C|323
8ANA|1|a|A|324
8ANA|1|a|G|325
*
8ANA|1|a|C|337
8ANA|1|a|G|338
8ANA|1|a|U|339
8ANA|1|a|A|340
8ANA|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24