J3_8AP4_010

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8AP4|1|a|A|2518, 8AP4|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AP4_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1093

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8AP4|1|a|C|2517
8AP4|1|a|A|2518
8AP4|1|a|U|2519
8AP4|1|a|C|2520
*
8AP4|1|a|G|2545
8AP4|1|a|U|2546
8AP4|1|a|A|2547
*
8AP4|1|a|U|2561
8AP4|1|a|U|2562
8AP4|1|a|U|2563
8AP4|1|a|A|2564
8AP4|1|a|A|2565
8AP4|1|a|A|2566
8AP4|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14