J3_8B6C_001

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8B6C|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B6C|1|5|C|112
8B6C|1|5|A|113
8B6C|1|5|G|114
8B6C|1|5|C|115
8B6C|1|5|G|116
*
8B6C|1|5|C|155
8B6C|1|5|G|156
8B6C|1|5|U|157
8B6C|1|5|A|158
8B6C|1|5|C|159
8B6C|1|5|G|160
*
8B6C|1|5|C|275
8B6C|1|5|C|276
8B6C|1|5|G|277
8B6C|1|5|G|278

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain i

60S ribosomal protein L36