J3_8B6C_009

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8B6C|1|5|U|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B6C|1|5|A|2394
8B6C|1|5|G|2395
8B6C|1|5|A|2396
8B6C|1|5|U|2397
8B6C|1|5|G|2398
*
8B6C|1|5|C|2415
8B6C|1|5|A|2416
8B6C|1|5|G|2417
8B6C|1|5|U|2418
*
8B6C|1|5|A|2600
8B6C|1|5|G|2601
8B6C|1|5|G|2602
8B6C|1|5|G|2603
8B6C|1|5|U|2604
8B6C|1|5|G|2605
8B6C|1|5|U|2606
8B6C|1|5|A|2607
8B6C|1|5|A|2608
8B6C|1|5|A|2609
8B6C|1|5|U|2610

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27