J3_8B7Y_016

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8B7Y|1|I|U|686, 8B7Y|1|I|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B7Y_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0508

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8B7Y|1|I|U|683
8B7Y|1|I|G|684
8B7Y|1|I|A|685
8B7Y|1|I|U|686
8B7Y|1|I|C|687
8B7Y|1|I|U|688
8B7Y|1|I|A|689
*
8B7Y|1|I|U|773
8B7Y|1|I|G|774
8B7Y|1|I|G|775
*
8B7Y|1|I|C|791
8B7Y|1|I|A|792
8B7Y|1|I|A|793
8B7Y|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain k

50S ribosomal protein L34