J3_8B7Y_017

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B7Y_017 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0633

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8B7Y|1|I|C|698
8B7Y|1|I|A|699
8B7Y|1|I|G|700
*
8B7Y|1|I|C|732
8B7Y|1|I|G|733
8B7Y|1|I|A|734
8B7Y|1|I|A|735
8B7Y|1|I|C|736
*
8B7Y|1|I|G|760
8B7Y|1|I|A|761
8B7Y|1|I|U|762
8B7Y|1|I|G|763

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2