J3_8B7Y_024

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8B7Y|1|I|A|2518, 8B7Y|1|I|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B7Y_024 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0611

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8B7Y|1|I|C|2517
8B7Y|1|I|A|2518
8B7Y|1|I|U|2519
8B7Y|1|I|C|2520
*
8B7Y|1|I|G|2545
8B7Y|1|I|U|2546
8B7Y|1|I|A|2547
*
8B7Y|1|I|U|2561
8B7Y|1|I|U|2562
8B7Y|1|I|U|2563
8B7Y|1|I|A|2564
8B7Y|1|I|A|2565
8B7Y|1|I|A|2566
8B7Y|1|I|G|2567

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain S

50S ribosomal protein L14