J3_8B7Y_035

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8B7Y|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B7Y_035 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0774

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8B7Y|1|I|G|297
8B7Y|1|I|G|298
8B7Y|1|I|A|299
8B7Y|1|I|A|300
8B7Y|1|I|G|301
*
8B7Y|1|I|C|316
8B7Y|1|I|G|317
8B7Y|1|I|C|318
8B7Y|1|I|G|319
8B7Y|1|I|A|320
8B7Y|1|I|U|321
8B7Y|1|I|A|322
8B7Y|1|I|C|323
8B7Y|1|I|A|324
8B7Y|1|I|G|325
*
8B7Y|1|I|C|337
8B7Y|1|I|G|338
8B7Y|1|I|U|339
8B7Y|1|I|A|340
8B7Y|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24