J3_8B7Y_039
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8B7Y|1|J|C|12, 8B7Y|1|J|U|14, 8B7Y|1|J|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B7Y_039 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.3496
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8B7Y|1|J|G|10
8B7Y|1|J|C|11
8B7Y|1|J|C|12
8B7Y|1|J|G|13
8B7Y|1|J|U|14
8B7Y|1|J|A|15
8B7Y|1|J|G|16
*
8B7Y|1|J|C|68
8B7Y|1|J|G|69
8B7Y|1|J|C|70
*
8B7Y|1|J|G|106
8B7Y|1|J|G|107
8B7Y|1|J|A|108
8B7Y|1|J|A|109
8B7Y|1|J|C|110
Current chains
- Chain J
- 5S ribosomal RNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- 50S ribosomal protein L18
- Chain d
- 50S ribosomal protein L25
- Chain e
- 50S ribosomal protein L27
Coloring options: