J3_8BF7_001

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8BF7|1|0|U|686, 8BF7|1|0|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BF7_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1092

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8BF7|1|0|U|683
8BF7|1|0|G|684
8BF7|1|0|A|685
8BF7|1|0|U|686
8BF7|1|0|C|687
8BF7|1|0|U|688
8BF7|1|0|A|689
*
8BF7|1|0|U|773
8BF7|1|0|G|774
8BF7|1|0|G|775
*
8BF7|1|0|C|791
8BF7|1|0|A|792
8BF7|1|0|A|793
8BF7|1|0|A|794

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain c

50S ribosomal protein L34