3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BF7_002 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.0897
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

8BF7|1|0|C|698
8BF7|1|0|A|699
8BF7|1|0|G|700
*
8BF7|1|0|C|732
8BF7|1|0|G|733
8BF7|1|0|A|734
8BF7|1|0|A|735
8BF7|1|0|C|736
*
8BF7|1|0|G|760
8BF7|1|0|A|761
8BF7|1|0|U|762
8BF7|1|0|G|763

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain A
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2541 s
Application loaded.