J3_8BF7_020

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8BF7|1|0|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BF7_020 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1121

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BF7|1|0|G|297
8BF7|1|0|G|298
8BF7|1|0|A|299
8BF7|1|0|A|300
8BF7|1|0|G|301
*
8BF7|1|0|C|316
8BF7|1|0|G|317
8BF7|1|0|C|318
8BF7|1|0|G|319
8BF7|1|0|A|320
8BF7|1|0|U|321
8BF7|1|0|A|322
8BF7|1|0|C|323
8BF7|1|0|A|324
8BF7|1|0|G|325
*
8BF7|1|0|C|337
8BF7|1|0|G|338
8BF7|1|0|U|339
8BF7|1|0|A|340
8BF7|1|0|C|341

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24