J3_8BF7_021

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BF7_021 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1742

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8BF7|1|0|U|1344
8BF7|1|0|C|1345
8BF7|1|0|G|1346
8BF7|1|0|A|1347
8BF7|1|0|C|1348
8BF7|1|0|C|1349
*
8BF7|1|0|G|1382
8BF7|1|0|A|1383
8BF7|1|0|A|1384
8BF7|1|0|A|1385
*
8BF7|1|0|U|1402
8BF7|1|0|A|1403

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains