J3_8BF7_023
3D structure
- PDB id
- 8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8BF7|1|0|A|2388, 8BF7|1|0|U|2390, 8BF7|1|0|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BF7_023 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1459
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8BF7|1|0|G|2282
8BF7|1|0|C|2283
8BF7|1|0|A|2284
*
8BF7|1|0|U|2384
8BF7|1|0|C|2385
8BF7|1|0|A|2386
8BF7|1|0|U|2387
8BF7|1|0|A|2388
8BF7|1|0|G|2389
8BF7|1|0|U|2390
8BF7|1|0|G|2391
8BF7|1|0|A|2392
8BF7|1|0|U|2393
8BF7|1|0|C|2394
8BF7|1|0|C|2395
*
8BF7|1|0|G|2421
8BF7|1|0|C|2422
8BF7|1|0|U|2423
8BF7|1|0|C|2424
8BF7|1|0|A|2425
8BF7|1|0|A|2426
8BF7|1|0|C|2427
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain b
- 50S ribosomal protein L33
- Chain d
- 50S ribosomal protein L35
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